PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA93G00174
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 538aa    MW: 58968.5 Da    PI: 6.9412
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA93G00174genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.6e-21156242186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +L++a++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk ++++++++   s s++p+f+++e
  AA93G00174 156 EWSDSAIACLLDAYSDKFTQLNRGNLRGRDWEEVAATVseRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSGG-SSASHWPWFTKME 242
                 5*************************************888899****************************95.45569*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-22154244No hitNo description
Gene3DG3DSA:3.40.1160.103.0E-68290530IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.422296531IPR015963Uridylate kinase, bacteria
SuperFamilySSF536332.49E-55297530IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.71E-122299531No hitNo description
PfamPF006964.9E-26300510IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPNQ QHHHHQVLHH PPYASRRFTS KPQNQIHVSH HQRNGNEEED  60
NDVVVETSSA FHGVNPFSAD ENSNPYDNNN GAPDADGNLD ANRSRIGGVR VEKRQNQEEL  120
SDGGTTNGGE TTPYCSFKRP RTSSSSAGEY RKDREEWSDS AIACLLDAYS DKFTQLNRGN  180
LRGRDWEEVA ATVSERCEKL SKSVEQCKNK IDNLKKRYKL ERHRMSSGGS SASHWPWFTK  240
MEEIVGNSLG TKGVSDEDRS GSSLGNTVKP ARRYSLVTYN PGVQLSNVKS KVTSNPRWRR  300
VVLKISGAAL ACTGPNNIDP KVVNLIAREV AMACRLGVEV AIVVGSRNFF CGDTWITATG  360
MDKTTAYHIS MMASVMNSVL LQSSLERIGI QARLQTAISV QGVGEPYNRQ RAIRHLDKGR  420
VVIFGGIGAT LGNPLLSSDT AAALRATEIN AEALVKGTNV DGVYDCHSQD NNVTFEHISF  480
QDLTSRGLTS MDSMALNFCE ENNIPVVVFN FLEAGNVTKA LCGEQVGTLI DRSGRGVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-572905301239Uridylate kinase
3ek5_B1e-572905301239Uridylate kinase
3ek5_C1e-572905301239Uridylate kinase
3ek5_D1e-572905301239Uridylate kinase
3ek5_E1e-572905301239Uridylate kinase
3ek5_F1e-572905301239Uridylate kinase
3ek6_A1e-572905301239Uridylate kinase
3ek6_B1e-572905301239Uridylate kinase
3ek6_C1e-572905301239Uridylate kinase
3ek6_D1e-572905301239Uridylate kinase
3ek6_E1e-572905301239Uridylate kinase
3ek6_F1e-572905301239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA93G00174
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566366.10.0aspartate/glutamate/uridylate kinase family protein
TrEMBLA0A384L5830.0A0A384L583_ARATH; Uncharacterized protein
TrEMBLQ94JR10.0Q94JR1_ARATH; AT3g10030/T22K18_15
STRINGAT3G10030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein