PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA93G00089

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

MYB

Protein Properties

Length: 382aa MW: 42043.7 Da PI: 5.123

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA93G00089	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l + v++ G+++W+tIar ++ gR++k+c++rw + AA93G00089 60 KGPWSPEEDVVLSQFVEKSGPRNWSTIARGIP-GRSGKSCRLRWCNQ 105 79****************************.*********985 PP
2	Myb_DNA-binding	55.9	1e-17	112	156	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+ Ed++++ a++ +G++ W++Ia+ ++ gRt++ +k++w++ AA93G00089 112 RNSFTEAEDQKIIAAHAIHGNR-WAAIAKLLP-GRTDNAIKNHWNST 156 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.11	55	106	IPR017930	Myb domain
SuperFamily	SSF46689	1.05E-29	58	153	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-14	59	108	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-16	60	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-24	61	113	IPR009057	Homeodomain-like
CDD	cd00167	4.32E-13	62	104	No hit	No description
PROSITE profile	PS51294	27.326	107	161	IPR017930	Myb domain
SMART	SM00717	2.3E-17	111	159	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-16	112	156	IPR001005	SANT/Myb domain
CDD	cd00167	4.49E-13	114	157	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-24	114	160	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MEEETTKRRP AMTESGRGIS PMEEAAVENM EVGFRGDDDC GGSGGVGDDV TGKRGKERVK 60 GPWSPEEDVV LSQFVEKSGP RNWSTIARGI PGRSGKSCRL RWCNQLDPSL KRNSFTEAED 120 QKIIAAHAIH GNRWAAIAKL LPGRTDNAIK NHWNSTLRRR CIDIEKAKNI ATTENMIIED 180 SIFDRTTTRA SSEETLSSNG GHVTTPHLSS EGKETTSLEI YEEQCADKTN GETMSKQQQE 240 ANDDPQTLFR PVPRFSSFNV YDASSKPVSS PNQTQDPQSS TQDTSMLRLL EEAYSERFVP 300 QKCGRGCCSN PIGTCEKNSL LGPEFIDYLD PPTFPSYELA AIATDISSLA WLRSGLESSS 360 VKVMEEAVGR LMPQSSKGHL AT

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MEEETTKRRP AMTESGRGIS PMEEAAVENM EVGFRGDDDC GGSGGVGDDV TGKRGKERVK  60
GPWSPEEDVV LSQFVEKSGP RNWSTIARGI PGRSGKSCRL RWCNQLDPSL KRNSFTEAED  120
QKIIAAHAIH GNRWAAIAKL LPGRTDNAIK NHWNSTLRRR CIDIEKAKNI ATTENMIIED  180
SIFDRTTTRA SSEETLSSNG GHVTTPHLSS EGKETTSLEI YEEQCADKTN GETMSKQQQE  240
ANDDPQTLFR PVPRFSSFNV YDASSKPVSS PNQTQDPQSS TQDTSMLRLL EEAYSERFVP  300
QKCGRGCCSN PIGTCEKNSL LGPEFIDYLD PPTFPSYELA AIATDISSLA WLRSGLESSS  360
VKVMEEAVGR LMPQSSKGHL AT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	4e-39	57	161	55	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	4e-39	57	161	55	159	MYB PROTO-ONCOGENE PROTEIN
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA93G00089

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006407701.1	1e-170	transcription factor MYB1
Swissprot	Q42575	1e-161	MYB1_ARATH; Transcription factor MYB1
TrEMBL	V4LZ71	1e-169	V4LZ71_EUTSA; Uncharacterized protein
STRING	Bostr.22252s0145.1.p	1e-173	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-158	myb domain protein 1

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]