PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00299
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 359aa    MW: 40820.3 Da    PI: 8.4846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00299genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.31.7e-07197219123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C++Cgk F+r  nL+ H+r H
  AA8G00299 197 HYCQICGKGFKRDANLRMHMRAH 219
                68*******************99 PP
2zf-C2H211.40.001319334621
                TTEEESSHHHHHHHHH CS
    zf-C2H2   6 CgksFsrksnLkrHir 21 
                Cg++Fsrk+ L +H +
  AA8G00299 319 CGTRFSRKDKLLSHVS 334
                **************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.68E-6195222No hitNo description
Gene3DG3DSA:3.30.160.603.0E-6197224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.632197224IPR007087Zinc finger, C2H2
SMARTSM003550.0028197219IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355160249282IPR015880Zinc finger, C2H2-like
SMARTSM00355130287309IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSCISEPATT TTSSTPIYIN PIKSSTTTRE ISPENDDVSL SLLYNLSTIQ DKVHQIQSLV  60
SLLMISTNNQ TNKSSISSGS TSLTIESLVQ GIITSASSMI FTCQQLHITS NNNKDHHDMV  120
MEFSRQELIN PNQDFLKETN FVGVQEKGEF SFPDQISQNL DCRYNSQTLN PNNPKSKPSD  180
YEILELNAAD LLAKYTHYCQ ICGKGFKRDA NLRMHMRAHG DEYKTREALL NPMSLNQNEN  240
KEFSLKHFYS CPQQGCRWNQ RHEKFQPLKS VICAKNHYKR SHCPKMYMCR RCCVKQFSVL  300
SDLRTHEKHC GDIKWVCSCG TRFSRKDKLL SHVSLFLGHA PVNADAQRRT QAPVPVVIG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00299
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454569.11e-164PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ0WT241e-164STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1J3FLB01e-166A0A1J3FLB0_NOCCA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_010454569.11e-163(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-159C2H2 family protein