PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA8G00241
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 379aa    MW: 43259.8 Da    PI: 4.64
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA8G00241genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.13.2e-34151072102
                   HHHHHHHHHCTGGGTTTSEESSSS.SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng.nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   Fl+k ye+++d +++++isws+ng nsfv++d++ f+ ++Lp+yFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F kg+kell+++
     AA8G00241  15 FLRKCYEMVDDCSTDSIISWSRNGdNSFVIWDTTLFSLQLLPNYFKHSNFSSFIRQLNIYGFRKIDADR---------WEFANDGFAKGQKELLKNV 102
                   9********************77669****************************************999.........******************* PP

                   XXXXX CS
  HSF_DNA-bind  98 krkks 102
                    r+k+
     AA8G00241 103 TRRKN 107
                   ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-348100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3110105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5511105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-2915105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.6E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVKSAGGGSS SVAPFLRKCY EMVDDCSTDS IISWSRNGDN SFVIWDTTLF SLQLLPNYFK  60
HSNFSSFIRQ LNIYGFRKID ADRWEFANDG FAKGQKELLK NVTRRKNVQT NEQSRSVDKQ  120
QESTSESQET AEKTGLWEEV DILKDDKKAM AQELNNLREF QEITDTKMVH LKDKVQGMEE  180
SQQEMLSFLV MVIQNPNLLV QLLQPKENTW RKPEGGATIL EEVTEVAEDY HGDGDGDGLP  240
LVTYKQSSPS SVASLPLQNN GDLNDFLRNA DMMKFCVDEN HVPLIIPDLY DDGAWEKLLL  300
LSPSKKKKKK KRGSDLKKGK EVEDVTLEDV RMDSDKRHML ELIVEEMEKA DDFEVEKLTP  360
EKSRNLELIT EQMGLLASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23210516129Heat shock factor protein 1
5d5v_B4e-23210516129Heat shock factor protein 1
5d5v_D4e-23210516129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311KKKKKKR
2306317KKKKKRGSDLKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA8G00241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470753.10.0PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-8-like
SwissprotQ9S7U51e-176HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLD7KW841e-176D7KW84_ARALL; Predicted protein
STRINGXP_010470753.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-153heat shock transcription factor A8