PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA87G00096
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 249aa    MW: 29180.6 Da    PI: 9.2965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA87G00096genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-057598123
                EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                ++C++C+k+F    +L +H +t H
  AA87G00096 75 WRCEYCKKVFYEEKYLDKHFNTrH 98
                58*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.7467598IPR007087Zinc finger, C2H2
PROSITE patternPS0002807798IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPSSLPQQNL EINGVDEVHC SRERSRAAWK ILQEYLIPYV EKAKYELPRS CRIHKDNDIY  60
RDQEEHKGHI DINEWRCEYC KKVFYEEKYL DKHFNTRHKN LLNESHGKCL ADLCGALHCD  120
HVVDIARRKS KCNPAAAARN RHLCESLADS CFPVSKGPSA SRLHEFFLRQ FCDAHTCSGD  180
SKPLSKKPKK TSVLYICFCI FSILFLLFFY SFFYLYRRGL RSRFQQLKRI NAMGPARRNH  240
PFMGPAIGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA87G00096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198887.11e-125zinc finger (C2H2 type) family protein
TrEMBLA0A178UI371e-125A0A178UI37_ARATH; Uncharacterized protein
STRINGAT5G40710.11e-124(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.14e-92C2H2-like zinc finger protein