PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA7G00135
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 166aa    MW: 18696.5 Da    PI: 6.26
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA7G00135genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.9e-0538771054
               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               + R d++ ++++ L++++ +      +K + a++L  A++YI  L
  AA7G00135 38 KERKDKVGDRISALQQIVSPY-----GKTDTASVLLDAMHYIEFL 77
               6789999************99.....9***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.6832877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-113693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-73896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-43882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEFSREAGMM MENKRSVCSL EETNIKRHKS DLSLTSSKER KDKVGDRISA LQQIVSPYGK  60
TDTASVLLDA MHYIEFLHEQ LKVLSAPYLQ TMPAITPLEL NLVPRLNICL CYQEEVEEYS  120
LRSRGLCLVP MEYTVGVAQS NGADIWAPVK TPPSPAFNVN SQSPFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA7G00135
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451560.19e-91PREDICTED: transcription factor bHLH113-like isoform X1
RefseqXP_018451572.19e-91PREDICTED: transcription factor bHLH113-like isoform X1
SwissprotQ7XJU21e-89BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A078JM075e-89A0A078JM07_BRANA; BnaAnng25330D protein
STRINGBo8g005780.16e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33162761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.56e-92bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]