PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA7G00048
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 333aa    MW: 36334.2 Da    PI: 6.4262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA7G00048genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-051852231154
                HHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  11 rRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  AA7G00048 185 LRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 223
                6******************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.969174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-10184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-4184229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-10187232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MANNSSNHNL NDQTPSDDFF EQILGISSFS TSSGSGLSGV DGGLGSGTSQ MMLQLGSSDE  60
SLGFHSQMFP LGLSLDQGKG HGFLKPESVL GNGKRFSDDV VDNRSSSSMK PVFHGQPMSQ  120
PVPPMPHQQS SIRPRVRARR GQATDPHSIA ERVKIRHKNL QISFVFQSNA SSFNVEVHVL  180
YHLQLRRERI AERIRALQEL VPTVNKTDRA AMIDEIVDYV KFLRLQVKVL SMSRLGGAGA  240
VAPLVTETPL LSSVEDDTNG QEPGWEKWSN DGTESEVAKL MEDNIGAAMQ LLQSKALCIM  300
PISLAMAIYN SNPPDATSSS VIKPEMMMMN PLP
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA7G00048
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418274.11e-143transcription factor bHLH7
SwissprotO227681e-137UNE12_ARATH; Transcription factor UNE12
TrEMBLE4MXA61e-141E4MXA6_EUTHA; mRNA, clone: RTFL01-21-H10
TrEMBLV4L2X21e-141V4L2X2_EUTSA; Uncharacterized protein
STRINGXP_006418274.11e-142(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]