PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA75G00012
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SBP
Protein Properties Length: 375aa    MW: 41425.6 Da    PI: 8.4277
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA75G00012genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.11.8e-41103179278
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 C v+gC++d+s+++eyhrrhkvCe+hsk+pvv+++g +qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+
  AA75G00012 103 CLVDGCDSDFSNCREYHRRHKVCEIHSKTPVVTINGNKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 179
                 9*************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3397164IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069100177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-39101182IPR004333Transcription factor, SBP-box
PfamPF031108.6E-31103176IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEWNFKLSSG YLTQFDQESV PDLSPIDASI SFGGSHTKPD FSFDLKLGNL GNSSGLTTTE  60
QVLNPSKWKE TGETKPEGSR SSGSSSSSKR TRGNGFGNQM PFCLVDGCDS DFSNCREYHR  120
RHKVCEIHSK TPVVTINGNK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD  180
HLARSSNLFS GTKLLQFSGS SHVFPTTSVI NPGQSWGNSY TSPGQFTLPE KTGIMFPISS  240
SNSSNYNNKS STARKQQFLP FEQAENSRGQ SRTTSLCERM TSCIHDSDCA LSLLSSSSSQ  300
QIHSPDTSLG HIRANSVTHL IHPQQQQQQP LSSLVETGFY GSGMFENASA GSDGSVVISG  360
TEAVRPPQAF PFHWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-28100176884squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159176KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA75G00012
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0965835e-70KM096583.1 Cardamine hirsuta squamosa promoter-binding-like protein 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442225.11e-149PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotB9DI201e-148SP13A_ARATH; Squamosa promoter-binding-like protein 13A
SwissprotP0DI111e-148SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBLS4WVY81e-156S4WVY8_ARAAL; SQUAMOSA promoter binding protein-like protein 13
STRINGXP_010442225.11e-149(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41112759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-137SBP family protein
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xu M, et al.
    Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana.
    PLoS Genet., 2016. 12(8): p. e1006263
    [PMID:27541584]