PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA751G00002
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 386aa    MW: 43651.1 Da    PI: 7.02
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA751G00002genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.62.2e-25284364185
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                  rW+++ev+aLi++r e+e+++++g   ++ W+e+s +m+erg+ rs+k+Ckekwen+nk+yk+i eg kk+ +e+s+t +yf++l
  AA751G00002 284 RWPQEEVQALITVRGEVEDKIGKG---GAIWDEISLRMQERGYGRSAKKCKEKWENMNKYYKRIMEGGKKQ-PEHSKTRSYFQKL 364
                  8**********************9...899***************************************95.9**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.4E-4281340IPR001005SANT/Myb domain
CDDcd122036.74E-22283344No hitNo description
Gene3DG3DSA:1.10.10.605.9E-5283338IPR009057Homeodomain-like
SuperFamilySSF466892.09E-5283358IPR009057Homeodomain-like
PfamPF138372.1E-19283365No hitNo description
PROSITE profilePS500907.596284338IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MELVAGDCRK RVTDEFAEDI DSFDGSDGGC NWIYGSRQSG SLIQAQPKGN DDALATLANL  60
ASPPQKLRPI RCCVKPPSED RHALDILAGT LDKLPEMGFL GDGFYEAPSG GNIAEGEESG  120
LLTRELAKED QDSRMELVGP NSRNRTSLSS SVDSDGESSQ GGKRKRKRRE KLENFLEKLV  180
GSMMKRQEKM HSQLITVMEK MERERILREE AWRKQEMERW KENEEVRKQE ISRSLSLISF  240
IKTSIGHEIE IPQPQKMSKP GGDANCESAQ THGEVKFGYS SGKRWPQEEV QALITVRGEV  300
EDKIGKGGAI WDEISLRMQE RGYGRSAKKC KEKWENMNKY YKRIMEGGKK QPEHSKTRSY  360
FQKLGSLYKN EPGNSPLVDP LGEREE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168KRKRKRR
2163168RKRKRR
3165170RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA751G00002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006398465.11e-173trihelix transcription factor GTL1
RefseqXP_024010989.11e-173trihelix transcription factor GTL1
TrEMBLV4LJC41e-172V4LJC4_EUTSA; Uncharacterized protein
STRINGXP_006398465.11e-173(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-135Trihelix family protein