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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA72G00006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 138aa MW: 15552.7 Da PI: 8.6382 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.2 | 1.2e-09 | 22 | 64 | 6 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT...-EEEEEEE-TTSE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCd...aevaviifsstgk 45 k +r+v fskRr +++KK E+S C+ a vav+ ++ gk AA72G00006 22 KEQRYVAFSKRRPTLFKKVAEVSSTCEscrATVAVLTTAPCGK 64 789*******************987643338999998887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-5 | 9 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.353 | 9 | 49 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-10 | 11 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-8 | 22 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MENKSAVKKT KQKIEIAARD TKEQRYVAFS KRRPTLFKKV AEVSSTCESC RATVAVLTTA 60 PCGKPESMHS LDSVNSSAFD IAKAYLEGIV PPPQSSEFWW KNSKFEEIED DSEKQNLKEH 120 LQQTISDVVA CLRKRGDL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA72G00006 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27130.1 | 1e-19 | AGAMOUS-like 39 |