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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA65G00297 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 27407.2 Da PI: 8.3952 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.1 | 1.8e-14 | 68 | 120 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r +h e+E++RR+++ s f +Lr++lP ++K s ++ + +Av+YIk+Lq AA65G00297 68 KRLKHREIEKQRRREVTSLFKNLRSILPFqY---IKGKRSSSDHVFEAVNYIKDLQ 120 799**************************66...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-15 | 64 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.37E-12 | 65 | 124 | No hit | No description |
PROSITE profile | PS50888 | 13.643 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 68 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.8E-12 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-4 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDFASSSLFT SDFSNENALD FSSLITPSSF LSFQESISCI PITLTNVEND KNRKSYDKIA 60 VDEERKNKRL KHREIEKQRR REVTSLFKNL RSILPFQYIK GKRSSSDHVF EAVNYIKDLQ 120 NNIKTLEKTR NQIKRSITYV KPSLSSSSPS SLSSSTNCSC IGDTHIDVVI KPCLVGIEII 180 TSCCFRHNLS SVLEFLAQEQ CFEIVSCIST KLHQRFMHTI VSKVDDGTTI NYLELQEKIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA65G00297 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417224.1 | 2e-93 | transcription factor bHLH55 | ||||
Swissprot | Q9LN95 | 3e-91 | BH055_ARATH; Transcription factor bHLH55 | ||||
TrEMBL | V4KZW8 | 5e-92 | V4KZW8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417224.1 | 8e-93 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6228 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12540.1 | 4e-91 | bHLH family protein |
Publications ? help Back to Top | |||
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