PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA65G00271

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

NAC

Protein Properties

Length: 380aa MW: 44221.9 Da PI: 6.6281

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA65G00271	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.8e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kkv++k++e+ ++ik++d+yk+ePwdL++ k+ +ee+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++ + AA65G00271 7 VPPGFRFHPTDEELVDYYLRKKVASKRIEI-DFIKDIDLYKIEPWDLQElcKIGHEEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYL-R 103 69**************************.99**********9544444444359*********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++l+g++ktLvfykgrap+g+k+dW+mheyrle AA65G00271 104 HSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-60	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.135	7	156	IPR003441	NAC domain
Pfam	PF02365	1.0E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH 60 EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHSLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRLTA VRRMGDYDSS PSHWYDDQLS 180 FMTSDLETNS PRRIIPNHHH NHHHHHQPYG LNASTYTLNN PNLQCKQELE LQYNQLVQQH 240 HLNEPPLTFL QIPHLENPKI HQDNSNQNSL ACGSSNINNN SSHHGNLQQM NLGQDEQLNQ 300 GNQSFNSLYM SSSNEQTTDQ VTDWRVLDKF VASQLSNEEA AANSNSIQNI NEENELKRVS 360 EMGEEYAAST SSSCQIDLWK

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MNSFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIEIDFIK DIDLYKIEPW DLQELCKIGH  60
EEQSDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YLRHSLIGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETDEN GAPQEEGWVV CRVFKKRLTA VRRMGDYDSS PSHWYDDQLS  180
FMTSDLETNS PRRIIPNHHH NHHHHHQPYG LNASTYTLNN PNLQCKQELE LQYNQLVQQH  240
HLNEPPLTFL QIPHLENPKI HQDNSNQNSL ACGSSNINNN SSHHGNLQQM NLGQDEQLNQ  300
GNQSFNSLYM SSSNEQTTDQ VTDWRVLDKF VASQLSNEEA AANSNSIQNI NEENELKRVS  360
EMGEEYAAST SSSCQIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA65G00271

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417252.1	0.0	NAC domain-containing protein 7 isoform X1
Swissprot	Q9FWX2	0.0	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	V4KD12	0.0	V4KD12_EUTSA; Uncharacterized protein
STRING	XP_006417252.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	0.0	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]