PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00112
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 394aa    MW: 44604.4 Da    PI: 7.7511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00112genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11224266754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   Er+RR+ri ++++ Lr l+P+      +K++ a +L  +v+YIk+L
  AA65G00112 224 HTERKRRSRITQGIHALRVLVPNI-----TKMNRAGTLGDTVDYIKQL 266
                 68*********************7.....7*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.4E-159156IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000837.19E-10215271No hitNo description
SuperFamilySSF474591.83E-13215277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.24217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13222280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9222266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MRGVERVKEF LRPFVDSRAW DFCVIWKLGD DPSRFIEWVG CCCSGCYIDK NIKLENGEET  60
EKNLSFLCRD EHNKHHIKTL SCEALSHFPL SMPLYPGIHG EVVMSKSPKW LVNSGPGSKK  120
DIFSTRVLVP VNDGLIELFS FIMKPIDESL VDSITSCCNT FSRESLKPFP EQTLKFLIIP  180
RTEESMNTGL NLTSSNVSNP SNEVENTGFV KKVPRENYKS KNLHTERKRR SRITQGIHAL  240
RVLVPNITKM NRAGTLGDTV DYIKQLLAEK QKLEDELKGI DEIELGKIDL KEKSAISDSL  300
HQTFIPETEK VSKKVNSQVN LEVHEIGERG FLIKATQEHK RNGFKNLLEA VDSIGLEIIN  360
VNFTKLDLTA MAILIVKAEK DGIGSANLRD YLLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651521.10.0transcription factor bHLH90-like isoform X2
SwissprotQ0WNR21e-173BH090_ARATH; Transcription factor bHLH90
TrEMBLA0A1J3EB630.0A0A1J3EB63_NOCCA; Transcription factor bHLH90
STRINGBostr.13671s0419.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.11e-102bHLH family protein