PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA65G00102
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 332aa    MW: 38274.2 Da    PI: 5.1527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA65G00102genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.7e-34881802103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei++de ++ +isws + +sf+++d+ +f++++LpkyFkh+nf+SF+RQLn+YgFkkv++++         weF+++ F+kg+k+ll++ik
    AA65G00102  88 FLRKTFEIVDDEVTDPVISWSPTRKSFIIWDSYRFSENLLPKYFKHKNFSSFIRQLNTYGFKKVDSDK---------WEFANEGFEKGSKHLLKNIK 175
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rk+++
    AA65G00102 176 RKRRS 180
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.25E-3184177IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5484177IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3585177IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3088177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-1888111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18126138IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340127151IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.5E-18139151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAANGVKNGS SSPFSQERST ETVTVKRDQP VIETLTNENG GSYDSSSSVT ETVKLNDVVS  60
LTKEEDVEEV TSFSKPVKGL HEIAPTPFLR KTFEIVDDEV TDPVISWSPT RKSFIIWDSY  120
RFSENLLPKY FKHKNFSSFI RQLNTYGFKK VDSDKWEFAN EGFEKGSKHL LKNIKRKRRS  180
NCTKDVTAIV KPLETMTELE ALKKDHSSLE SEILNLKQQQ EESHHQMINV QEKINGVETK  240
QLNILSFFTK LAKDEKFAER LMKKRKEIEQ EREIKETDEF VKKLKLLQSQ ENLPDMESGE  300
LDATEPKPLY DILMNDEFMS DVNADELNLM TV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-228818020123Heat shock factor protein 1
5d5u_B3e-228817729129Heat shock factor protein 1
5d5v_B3e-228817729129Heat shock factor protein 1
5d5v_D3e-228817729129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA65G00102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446368.11e-103PREDICTED: heat stress transcription factor A-9-like
RefseqXP_010446377.11e-103PREDICTED: heat stress transcription factor A-9-like
SwissprotQ9LVW21e-104HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLA0A087GI261e-113A0A087GI26_ARAAL; Uncharacterized protein
STRINGA0A087GI261e-113(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.11e-101heat shock transcription factor A9