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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA63G00051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ERF | ||||||||
Protein Properties | Length: 356aa MW: 39822 Da PI: 4.4874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.2 | 4.8e-19 | 78 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+k+++g AA63G00051 78 CSFRGVRQRV-WGKWVAEIREP---N-RgSRLWLGTFPTAEQAAAAYDEAAKAMYG 128 579*****99.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-13 | 78 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-18 | 78 | 136 | No hit | No description |
SMART | SM00380 | 6.5E-34 | 79 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.997 | 79 | 136 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-21 | 80 | 137 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.2E-9 | 80 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MAVYDETGNG STRKRKSRSR SDGTTVADKL KKWKQYNEIV EASSSIEGDN NKPRRKVPAK 60 GSKKGCMKGK GGPENSHCSF RGVRQRVWGK WVAEIREPNR GSRLWLGTFP TAEQAAAAYD 120 EAAKAMYGPL ARLNFPRAIG TTPSASEFTS TSGQSEVCTV DDKRSFCDVY VKQEDADCES 180 KPISQNCFDC LGVKEEFEVT KPLNQVENTA STPLRYDWLA EFEEQYLSEV LKEKEKPKEE 240 HIVDNNCPHQ EQDLLTVADY GWSNEMGNEQ MCWDPCELFD VTELLGDINE ATLPGSDQDT 300 NTMGGGTSSV VAETDKLQKQ EPLDQKQQVC SGSDLDLLQL EPYDGHEFFD LDSLDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-18 | 80 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 16 | TRKRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00346 | DAP | Transfer from AT3G11020 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA63G00051 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407478.1 | 1e-118 | dehydration-responsive element-binding protein 2B | ||||
Swissprot | O82133 | 1e-108 | DRE2B_ARATH; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | B3SQD5 | 1e-116 | B3SQD5_EUTHA; DREB2B | ||||
TrEMBL | V4NQN9 | 1e-116 | V4NQN9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407478.1 | 1e-117 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2874 | 17 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 2e-93 | DRE/CRT-binding protein 2B |