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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA62G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | C2H2 | ||||||||
Protein Properties | Length: 146aa MW: 16678.1 Da PI: 8.7605 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H +H AA62G00060 47 FECKTCNKKFSSFQALGGHRASH 69 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.2e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg++F + L H+r+H AA62G00060 94 HECSTCGQTFGTGQALGGHMRKH 116 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.1E-11 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.512 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.77E-7 | 47 | 116 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.9E-4 | 80 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 4.4E-11 | 94 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.242 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MKRNMADDNE SFENFDIVES LMMLSKSLVI KQTDVIKSTR SISSYNFECK TCNKKFSSFQ 60 ALGGHRASHK KPKLTVDQED VKQHCIKNEK DMNHECSTCG QTFGTGQALG GHMRKHRTSM 120 KARQYVHVMP MLHLDLNLTP LENDLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA62G00060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588473.1 | 3e-59 | PREDICTED: zinc finger protein ZAT11-like | ||||
Refseq | XP_013698875.1 | 3e-59 | zinc finger protein ZAT11-like | ||||
Refseq | XP_013703544.1 | 3e-59 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 7e-51 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A078F7G9 | 6e-58 | A0A078F7G9_BRANA; BnaC06g14860D protein | ||||
STRING | Bo6g067580.1 | 1e-58 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 2e-59 | C2H2 family protein |