PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA61G00551
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 304aa    MW: 34856.8 Da    PI: 6.0241
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA61G00551genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.32.4e-3130128197
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kv tpsdv+k++rlv+pk++ae++    + + +++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+++     +l++ 
  AA61G00551  30 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSTIDNKGLLLNFEDRTGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFHRN--GVNKLFID 126
                 89*************************999555568889************************************************54..55556776 PP

                 EE CS
          B3  96 vf 97 
                 + 
  AA61G00551 127 WK 128
                 65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-4221140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-3026124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.59E-2528125No hitNo description
SMARTSM010196.8E-2430131IPR003340B3 DNA binding domain
PROSITE profilePS5086314.36730131IPR003340B3 DNA binding domain
PfamPF023621.7E-2830129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNPMEEEGEA KSVTGESSSQ EKEEKKEHMF DKVVTPSDVG KLNRLVIPKQ HAERYFPLDS  60
TIDNKGLLLN FEDRTGNSWR FRYSYWNSSQ SYVMTKGWSR FVKDKKLDAG DIVSFHRNGV  120
NKLFIDWKKR PKIHHHQSNL ASHLFPRLYS YHNPLEQFSR NHESFDLWGQ NRHFHEFSRD  180
LGYGYLVRDN PTAVINPLVI ESVPVMMMHR RGGGEVAMAA REGGGESGSG KRLRLFGVDM  240
ECNVNTPEPE PEMEEAEEEE YSGGGGGLLE LRLVSNDESL ASLEDDEQHH YTKKGKSSLS  300
FDLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-60261334116B3 domain-containing transcription factor NGA1
5os9_B3e-60261334116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA61G00551
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402424.11e-102B3 domain-containing transcription factor NGA2
SwissprotQ9M2681e-101NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLV4LN251e-101V4LN25_EUTSA; Uncharacterized protein
STRINGXP_006402424.11e-101(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.15e-94B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]