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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA61G00283 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Trihelix | ||||||||
Protein Properties | Length: 245aa MW: 28091.8 Da PI: 10.1502 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.3 | 2.2e-14 | 25 | 123 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +Li+a +l+rg+l++++W+ev++++ ++ + r+ +qCk++++ l+k+yk +k++ ++ +s s +++f++l+ AA61G00283 25 CWSEDATFTLIQAWGHCYIELNRGNLRQKHWQEVADAVndrhfnaghnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNSAYISPWSFFSSLD 123 7************************************************997777789*************************99999********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.3E-23 | 23 | 125 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDTVNNSFSP GSSRPSSSTL SREDCWSEDA TFTLIQAWGH CYIELNRGNL RQKHWQEVAD 60 AVNDRHFNAG HNVSAAKSQP YRTDVQCKNR IDTLKKKYKV EKARVSESNS AYISPWSFFS 120 SLDDLLRESF PTSSTPDSTD NQRLTLPMAI VPVPVAPRSA IPRRPATAPG FMPIGGYKEV 180 AKAIEKLGQI YERVEERKRK EMMDLEKQRM RFAKELEYNR MKLFTEMQAH LHKRRRTTNS 240 KGSTS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00413 | DAP | Transfer from AT3G58630 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA61G00283 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001326954.1 | 1e-134 | sequence-specific DNA binding transcription factor | ||||
TrEMBL | A0A1J3DXM4 | 1e-138 | A0A1J3DXM4_NOCCA; Trihelix transcription factor ASIL2 | ||||
STRING | Bostr.20903s0103.1.p | 1e-127 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9635 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 1e-109 | sequence-specific DNA binding transcription factors |