PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA60G00186
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 169aa    MW: 20327.8 Da    PI: 9.1551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA60G00186genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.23.3e-3342141199
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f+k ltpsdv+k++rlv+pk++ae++  +  +e+  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ ++++++++++r
  AA60G00186  42 FEKPLTPSDVGKLNRLVIPKQHAERYfPLAAAEGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRADGGRFFIGWRR 140
                 99*************************77888999*************************************************88779999******9 PP

                 S CS
          B3  99 k 99 
                 +
  AA60G00186 141 R 141
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-4037143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-3040140IPR015300DNA-binding pseudobarrel domain
CDDcd100179.85E-2841131No hitNo description
PROSITE profilePS5086314.7242142IPR003340B3 DNA binding domain
SMARTSM010199.6E-2542142IPR003340B3 DNA binding domain
PfamPF023621.6E-3142141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSINQYTNEF HYHSLMWQQQ QQHQQNQHYH QNDTVLEKEA LFEKPLTPSD VGKLNRLVIP  60
KQHAERYFPL AAAEGLLLCF EDEEGKPWRF RYSYWNSSQS YVLTKGWSRY VKEKHLDAGD  120
VVLFHRHRAD GGRFFIGWRR RDAPISTHHN ASHLQYYPHS GIYLNFKFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-49351411113B3 domain-containing transcription factor NGA1
5os9_B5e-49351411113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA60G00186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746176.16e-84B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ21e-82Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A087H3015e-82A0A087H301_ARAAL; Uncharacterized protein
STRINGBostr.23794s0488.1.p5e-85(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-83B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]