PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA5G00056
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 307aa    MW: 33965.4 Da    PI: 8.8428
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA5G00056genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.9e-11157203555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  AA5G00056 157 HSLAERARREKISERMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 203
                999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.23E-9150207No hitNo description
SuperFamilySSF474596.28E-17150217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-17153217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDPPPLLNES SFSAANPSSY TLSEIWPFPV NDAVRLAVNS GRIFTRPDLI QHSVDKNVSP  60
PEESTVTDLS AGWGGRKRRD LNSEEDSSKM VSSSSSGNEL KESSEKKRKV SVSESGNVEG  120
ETSSGNGSKA TEQKTKPEPP KDYIHVRARR GQATDRHSLA ERARREKISE RMTALQDIIP  180
GCNKIIGKAL VLDEIINYIQ SLQRQVEFLS MKLEVVNSGA SSGSSIGVFP SANVATSYIS  240
FPGKFMIFRC YVYSLGSMFI ERYMISKKLA NREDRNQTGY ICRLMGTLTG THEKALFCLL  300
SGFFVEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199108LKESSEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA5G00056
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721041e-112AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845781e-112AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230231e-112AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394373.11e-129transcription factor bHLH79
SwissprotQ9LV171e-123BH079_ARATH; Transcription factor bHLH79
TrEMBLV4KKD61e-127V4KKD6_EUTSA; Uncharacterized protein
STRINGXP_006394373.11e-128(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.11e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]