PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA57G00018
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HD-ZIP
Protein Properties Length: 283aa    MW: 32658.1 Da    PI: 9.6435
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA57G00018genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.97.5e-18133187256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q   Le  F+ +++++ +++  LAkkl+Lt rqV vWFqNrRa+ k
  AA57G00018 133 RKKLRLSKHQSALLEHTFKDHNTLNPKQKLGLAKKLSLTSRQVEVWFQNRRARTK 187
                 677889***********************************************98 PP
2HD-ZIP_I/II117.11e-37133224192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlsk+q++lLE++F+ +++L+p++K  la++L l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr+ +k
   AA57G00018 133 RKKLRLSKHQSALLEHTFKDHNTLNPKQKLGLAKKLSLTSRQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLREENRRLQKEAAELRTLIK 224
                  69*************************************************************************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046186.6E-215103IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.28E-17122190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-17123188IPR009057Homeodomain-like
PROSITE profilePS5007116.617129189IPR001356Homeobox domain
SMARTSM003896.8E-14131193IPR001356Homeobox domain
PfamPF000463.3E-15133187IPR001356Homeobox domain
CDDcd000862.19E-13133190No hitNo description
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PfamPF021834.3E-8189222IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.0E-18189233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMMIMGKEDV GLSLSLGFSQ NHQHPLHLNV KPSSSLVSNL HMYPWNHHTF ISSSDEEKQE  60
YVRKMEVKRV RRSSVECEDD ERGVWSPKST ISSSMSGKRS EREGDETETL ERSCSGGGGT  120
NWEEEEGSDN KCRKKLRLSK HQSALLEHTF KDHNTLNPKQ KLGLAKKLSL TSRQVEVWFQ  180
NRRARTKLKQ TEVDCEYLKR CVEKLREENR RLQKEAAELR TLIKLSPQLF LNANRMMSPT  240
PATTLLMCSS CHCQRHSLPS SLKTTNSMLY NHNHIHKQHS LSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA57G00018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006284270.11e-101homeobox-leucine zipper protein HAT1
SwissprotP466001e-102HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A178V5P41e-100A0A178V5P4_ARATH; JAB
STRINGBostr.30275s0201.1.p1e-102(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-101Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]