PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA55G00066

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 371aa MW: 42032.9 Da PI: 9.8247

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA55G00066	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	27	76	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h e+Er+RR+++ s f+ Lr+llP + ++K s ++ + +Av+YIk+Lq AA55G00066 27 LHREIERQRRQEMASLFSSLRSLLPIHF--LKGKRSTSDQVNEAVNYIKYLQ 76 69**********************65..9******************9 PP
2	HLH	28.3	3.1e-09	196	247	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h Er+RR+++ + f+ Lr++lP ++K +e + Av++Ik+ q AA55G00066 196 KLLHRNLERQRRQEMATHFASLRSHLPLqY---IKGKRAISEHVNGAVNFIKDTQ 247 567999********************66...9***************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.948	23	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-14	25	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	0.00184	25	80	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-11	27	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-11	27	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-8	29	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-12	191	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.93E-7	192	250	No hit	No description
PROSITE profile	PS50888	11.935	194	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	196	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-7	196	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.53	200	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MNDCREKRRR CTKLMTVTRD NNMEKLLHRE IERQRRQEMA SLFSSLRSLL PIHFLKGKRS 60 TSDQVNEAVN YIKYLQKNIK EMSSRRDELM FLSGGTRDEE KISCKNHVVV RECLVGVEIV 120 FSGQPRLSSV LQVLSENGLC LLNSISSNVD DRLIYTIQAE ANDLGLIDLA GLEDRLTRLN 180 GSGGGDGAGD TKKEKKLLHR NLERQRRQEM ATHFASLRSH LPLQYIKGKR AISEHVNGAV 240 NFIKDTQTRI NDLTARRDEL RREIDPSCSS NPRQTRSGSG SGSSRSDPAT VQVQPCVKGV 300 EVVVSSAASG HEAWPLSRVL EILHQQGFEI ISSLTTRVNA RLMFTIQVQV NSFTFDLAWL 360 QQKLIEELNK F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MNDCREKRRR CTKLMTVTRD NNMEKLLHRE IERQRRQEMA SLFSSLRSLL PIHFLKGKRS  60
TSDQVNEAVN YIKYLQKNIK EMSSRRDELM FLSGGTRDEE KISCKNHVVV RECLVGVEIV  120
FSGQPRLSSV LQVLSENGLC LLNSISSNVD DRLIYTIQAE ANDLGLIDLA GLEDRLTRLN  180
GSGGGDGAGD TKKEKKLLHR NLERQRRQEM ATHFASLRSH LPLQYIKGKR AISEHVNGAV  240
NFIKDTQTRI NDLTARRDEL RREIDPSCSS NPRQTRSGSG SGSSRSDPAT VQVQPCVKGV  300
EVVVSSAASG HEAWPLSRVL EILHQQGFEI ISSLTTRVNA RLMFTIQVQV NSFTFDLAWL  360
QQKLIEELNK F

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA55G00066

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013674763.1	1e-90	transcription factor bHLH36-like
Refseq	XP_013710558.1	1e-90	transcription factor bHLH36-like
Swissprot	Q9FLI0	4e-84	BH120_ARATH; Transcription factor bHLH120
STRING	Bra022562.1-P	1e-89	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	2e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]