PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA54G00138
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 581aa    MW: 65211.1 Da    PI: 4.5453
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA54G00138genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.52.3e-48171432128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 +pGfrFhPtdeelvv+yLk+++ g++l++ +vi  vd+yk++P++Lp +  +k++++ w+fF++r++ky++  r++r t++gyWkatgkd+++   +++
  AA54G00138  17 APGFRFHPTDEELVVYYLKRRICGRRLRA-NVIGVVDVYKMDPEELPgQsLLKTGDRMWFFFTPRSRKYPNAARSSRGTATGYWKATGKDRTIEY-NTR 113
                 69**************************9.99**************96347788999*************************************9.999 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vglkktLvfy+grap+g++tdWvmhey++
  AA54G00138 114 AVGLKKTLVFYRGRAPDGQRTDWVMHEYTM 143
                 ****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.35516166IPR003441NAC domain
SuperFamilySSF1019415.49E-5516166IPR003441NAC domain
PfamPF023657.2E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MAESSPSTCF KGGKFSAPGF RFHPTDEELV VYYLKRRICG RRLRANVIGV VDVYKMDPEE  60
LPGQSLLKTG DRMWFFFTPR SRKYPNAARS SRGTATGYWK ATGKDRTIEY NTRAVGLKKT  120
LVFYRGRAPD GQRTDWVMHE YTMNEEELDR CKNVKDYYAL YKLFKKSGAG PKNGEQYGAP  180
FHEEEWADDD SEDADNVVVP EDPVVRYEEN RHVDDGIHLN PASVQLDDLE KLLFDIPDAP  240
EVPPRRTNEL ASGLSHVNSE EEVQSTLVNS SAEEFFAPRE IGEFLPNDQP YHRLSSFESL  300
VSTNSSEAIA TSSAPKNSSI GPLVFEKEDY IEIDDLLISD LGTEKPAEFW NPPGEFDNLN  360
EFDQLFHDVS MSLDMDPVFQ GTSTDPSSLR NFANNSPDQR QQQFFNQQFQ DPILENQLNN  420
FMDPSTALNQ IGDNTWFEDS QADFFGQPQS SSEPFASSSG VIPESTNPTL SVNTQDQEGQ  480
NGHGTTSQFS SALWAFMDSI PSTPASACEG PLNRTFVRMS SFSRMRFSGK GNGTEVGNTN  540
VTIAKKRSRN RGFLLLSIMG ALCAIFGVFI ATLQTSWRPV F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-441814317140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1545550KRSRNR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA54G00138
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868493.10.0LOW QUALITY PROTEIN: NAC domain-containing protein 17
SwissprotQ9XIC50.0NAC17_ARATH; NAC domain-containing protein 17
TrEMBLD7KJF40.0D7KJF4_ARALL; ANAC016
STRINGBostr.1040s0051.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.10.0NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]