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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA54G00108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 117aa MW: 14004.1 Da PI: 9.8488 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.3 | 6.3e-19 | 29 | 82 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q++ Le+ Fe+++++ ae++ ++A+++gL+ rqV vWFqNrRa++k AA54G00108 29 KKRRLSLDQVKKLEKNFEEEKKLEAERKLRIAEETGLNPRQVAVWFQNRRARWK 82 4557999**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.5 | 1.1e-35 | 28 | 115 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrls +qvk LE++Feee+kLe erK ++a+e gl+prqvavWFqnrRAR+k kqlE++y+ Lk+++d+lk + L ++ + L+ AA54G00108 28 EKKRRLSLDQVKKLEKNFEEEKKLEAERKLRIAEETGLNPRQVAVWFQNRRARWKIKQLEREYSLLKAHFDSLKIDYGDLLRQRKLLT 115 69***************************************************************************99999988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-18 | 22 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.584 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-16 | 27 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.87E-14 | 29 | 85 | No hit | No description |
Pfam | PF00046 | 4.1E-16 | 29 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 36 | 82 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.3E-5 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.3E-5 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.8E-9 | 84 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MDRLDSGEFQ AMVEAMENSV MEGDSFLEKK RRLSLDQVKK LEKNFEEEKK LEAERKLRIA 60 EETGLNPRQV AVWFQNRRAR WKIKQLEREY SLLKAHFDSL KIDYGDLLRQ RKLLTST |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARWKIKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA54G00108 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021284326.1 | 5e-40 | homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46668 | 6e-32 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A1R3K2I6 | 1e-38 | A0A1R3K2I6_9ROSI; Uncharacterized protein | ||||
TrEMBL | A0A2P5S7C7 | 9e-40 | A0A2P5S7C7_GOSBA; Uncharacterized protein | ||||
STRING | A0A087GGZ0 | 4e-39 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 2e-22 | homeobox protein 6 |
Publications ? help Back to Top | |||
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