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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA54G00103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26170.9 Da PI: 4.8783 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.9 | 3.7e-13 | 191 | 236 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq AA54G00103 191 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLEEAVEYVKTLQ 236 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.678 | 185 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-14 | 188 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.73E-11 | 189 | 239 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 190 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-7 | 191 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-10 | 191 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MQSTHVGNSG GGGGGSGGGG GEVSRGGLAR IRSAPATWIE TLLDEDEEED TLKPNLCLTE 60 LLTGNSVGIS SRESFDFTNS IEQNLYNQQS GFHRQNSSPA DFLSSSVAGS DGFFSNFGIP 120 ANYDYLSQNV DVSMGSKRSR EMEPQFSSHM KGEQSSGELS SMMDMNMDKI LEDSVPCRVR 180 AKRGCATHPR SIAERVRRTR ISDRIRRLQE LVPNMDKQTN TADMLEEAVE YVKTLQSQI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA54G00103 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013712334.1 | 1e-120 | transcription factor bHLH80-like | ||||
Refseq | XP_013712335.1 | 1e-120 | transcription factor bHLH80-like | ||||
Swissprot | Q9C8P8 | 1e-114 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A1J3JB64 | 1e-123 | A0A1J3JB64_NOCCA; Transcription factor bHLH80 | ||||
STRING | Bra036760.1-P | 1e-118 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-101 | bHLH family protein |