PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G01314
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 270aa    MW: 30474.4 Da    PI: 6.8133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G01314genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19107157155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIrdp    +r  r +lg+f taeeAa+ +++a+ +l+g
  AA53G01314 107 KKFRGVRQRR-WGKWAAEIRDP----IRrVRLWLGTFSTAEEAARVYDQAAIQLHG 157
                 59*****998.**********7....246*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-436251IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003801.1E-35108171IPR001471AP2/ERF domain
PfamPF008475.5E-12108157IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21108165IPR016177DNA-binding domain
PROSITE profilePS5103223.288108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-29108165IPR001471AP2/ERF domain
PRINTSPR003674.6E-10109120IPR001471AP2/ERF domain
CDDcd000186.63E-30109166No hitNo description
PRINTSPR003674.6E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEKDLKSIPQ MKYTEHRRII KRVFPSKRNS DFAGGFFPTP RFVRISVTDP YATDSSSSEE  60
ETVSSAPKRR RIKKYVNEIA FETVSSAPES KIPCYDAVLK KRVKLVKKFR GVRQRRWGKW  120
AAEIRDPIRR VRLWLGTFST AEEAARVYDQ AAIQLHGPAA ITNFAAPEPP YAVNIQSPTT  180
VLESPTSFES LPKSPAGEQD LSTSASTEII FPPIDDLFNF EISSEIPIAD DFSTSFDSRF  240
GFSDRFHSID GLFGSDLFQD IDDLFGSDLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-181081771479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673PKRRRIKK
26771KRRRI
399107KKRVKLVKK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G01314
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553551.14e-73PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotO825032e-47CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLV4MCI31e-67V4MCI3_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_010553551.11e-72(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2262444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.16e-34cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]