PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00812

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

bHLH

Protein Properties

Length: 334aa MW: 38312.6 Da PI: 6.0821

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00812	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.2e-14	130	176	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr++lP+ +K +Ka+ L ++++++k+L AA53G00812 130 KSHSEAERRRRERINTHLSKLRSILPNT-----TKTDKASLLAEVIQHMKEL 176 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.945	127	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	130	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.86E-4	130	179	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.1E-15	131	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-14	131	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	133	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0080147	Biological Process	root hair cell development
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MYAMKEEDCL QAFHNLQDYQ KDQFLLHHHP QILPWSTLPS FDPTRYPYPD PVHPPPPPYF 60 NSRRSSSSSS PSNYYDTLAS PPSMDHNHNH LRILSEALGP IMRRGFDGHD LMAKMSAQEV 120 MDAKALAASK SHSEAERRRR ERINTHLSKL RSILPNTTKT DKASLLAEVI QHMKELKRQT 180 SQISDTCPIP TESDELTVDS TAYNDEEGNL VIRASFCCQD RNDLMHDVIK ALKTLRLRTL 240 KAEIATVGGR VKNVLFLSRE DEDEEEYHRT FDNDDDDDDN EHKRYDHVSS IEEALKAVIE 300 KCVNNGENDN NNLEQSSSGS IKRQRTSKMV NQCY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	140	ERRRRE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269\|PubMed:20220754}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00812

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013697361.1	1e-167	transcription factor AIG1-like
Swissprot	Q9LS08	1e-162	BH032_ARATH; Transcription factor AIG1
TrEMBL	A0A1J3GJY4	1e-169	A0A1J3GJY4_NOCCA; Transcription factor AIG1 (Fragment)
STRING	Bostr.0556s0241.1.p	1e-166	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13949	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25710.1	1e-132	basic helix-loop-helix 32

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Jost R, et al. Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. J. Exp. Bot., 2015. 66(9): p. 2501-14 [PMID:25697796] Vera-Sirera F, et al. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants. Dev. Cell, 2015. 35(4): p. 432-43 [PMID:26609958] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]