PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA53G00687

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

C2H2

Protein Properties

Length: 469aa MW: 50094.2 Da PI: 8.6224

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA53G00687	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ AA53G00687 115 WKCEKCSKRYAVQSDWKAHSKTC 137 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.38E-5	102	136	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	103	136	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MEKIIMSSSS YNNNNTSIVP SSSSASPLPF FITTATISSS AAGDNDFHQK DSTFMSMIQQ 60 PNNPSSTPPP PPPKKRRNQP GNPKPTCVHH DPSRALGDLT GIKKHYYRKH GEKKWKCEKC 120 SKRYAVQSDW KAHSKTCGTK EYRCDCGTIF SRRDSYITHR AFCDALIQEA ARNPTVSFTS 180 MAPTANTVGS SGYYGRLGGN LVGLRGANNT LSQHSTSAGL ITPLAGYNLN IDHRRSENTK 240 FEEFGQSPNP NFFIQCSSSS QGMMNPHNND QSFMNQHGLI HDQFDHLKNS SSNGPFFNIG 300 FFQENNKNSE TSVPSLYSND VLGNHREENL NAGCNVSATA LLQKATQMGS MMSNNNNSEP 360 SGLFRGLMTG SSNEFGGGQI LESDNNGNLQ GLMNSLAGGG RGGGGGSGGN LFEVNFGNNG 420 NLSGSDKLTL DFLGVNGGII TNVSGGGGAA GRGGGGGGEV KFLQANHPF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MEKIIMSSSS YNNNNTSIVP SSSSASPLPF FITTATISSS AAGDNDFHQK DSTFMSMIQQ  60
PNNPSSTPPP PPPKKRRNQP GNPKPTCVHH DPSRALGDLT GIKKHYYRKH GEKKWKCEKC  120
SKRYAVQSDW KAHSKTCGTK EYRCDCGTIF SRRDSYITHR AFCDALIQEA ARNPTVSFTS  180
MAPTANTVGS SGYYGRLGGN LVGLRGANNT LSQHSTSAGL ITPLAGYNLN IDHRRSENTK  240
FEEFGQSPNP NFFIQCSSSS QGMMNPHNND QSFMNQHGLI HDQFDHLKNS SSNGPFFNIG  300
FFQENNKNSE TSVPSLYSND VLGNHREENL NAGCNVSATA LLQKATQMGS MMSNNNNSEP  360
SGLFRGLMTG SSNEFGGGQI LESDNNGNLQ GLMNSLAGGG RGGGGGSGGN LFEVNFGNNG  420
NLSGSDKLTL DFLGVNGGII TNVSGGGGAA GRGGGGGGEV KFLQANHPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	111	177	3	69	Zinc finger protein JACKDAW
5b3h_F	2e-34	111	177	3	69	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	405	GGRGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000305\|PubMed:19726569}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00256	DAP	Transfer from AT2G02080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA53G00687

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by gibberellin. {ECO:0000305\|PubMed:17933900}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395812.1	1e-166	protein indeterminate-domain 4, chloroplastic isoform X1
Refseq	XP_006395813.1	1e-167	protein indeterminate-domain 4, chloroplastic isoform X2
Swissprot	Q8GYC1	1e-159	IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBL	C7SI21	1e-174	C7SI21_EUTHA; Putative C2H2 zinc finger protein
STRING	XP_006395812.1	1e-166	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3678	17	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.2	1e-149	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]