PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA53G00560
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 356aa    MW: 39454.5 Da    PI: 5.965
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA53G00560genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.49.5e-072442821154
                 HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++++ +  L++l+ +      +K + a++L++A+eYIk L
  AA53G00560 244 VRKENLRDQITSLQQLVSPF-----GKTDTASVLQEAIEYIKFL 282
                 5788999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-9243293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-6243286No hitNo description
SMARTSM003530.0071243288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11243299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAEEFQATAE ICGGGGGAWW NSPRSVISPS DHFLSPCFGS RLTCMDNNNN NDVVFGQNKL  60
MQREADSDSG GSTVTMDSTL QMINLGFPSD WNHQTLIQED QGFLSTTSPY LINHCSSSSS  120
SSSSSNLLRS FYESEQTPYN DSQQLSWVNK MNPNQAFGLL NNFSNDTNSN PFWSSLSTPN  180
FNNNAINSFV TSQNIITPRL EDKTKNLKTR GNGCESVKRS GKDNESSAKK ARVATPSTLP  240
TFKVRKENLR DQITSLQQLV SPFGKTDTAS VLQEAIEYIK FLHDQVTVLS TPYMKQGSSI  300
HQQQQICGKS KNQDGEENQE LRRHGLCLVP ISSTFPVTNE TTADFWTPTF GGNTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA53G00560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322872.11e-169basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RefseqNP_564782.11e-169basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ94JL31e-170BH112_ARATH; Transcription factor bHLH112
TrEMBLA0A178WKI71e-167A0A178WKI7_ARATH; Uncharacterized protein
STRINGAT1G61660.11e-168(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80622636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-165bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]