PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA52G00027
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 249aa    MW: 28556.1 Da    PI: 7.4594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA52G00027genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.1e-20581233599
                 EEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  35 tltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +l++ed ++g+ We++++y+++s++yvltkGW+++vk ++L++gD++ Fk+++ +  +l+++++r+
  AA52G00027  58 MLSFEDeTTGKNWEFRYSYWNSSQSYVLTKGWSRYVKHKRLDAGDVIFFKRHRYDLHRLFIGWRRR 123
                 6788887889****************************************8766888999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-547124IPR003340B3 DNA binding domain
CDDcd100178.90E-1548114No hitNo description
SuperFamilySSF1019367.59E-1752123IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-2253132IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-1658123IPR003340B3 DNA binding domain
PROSITE profilePS5086311.01159124IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSVNHYTQEL HNNLFSNNQN DAVYNNHNQY DAVQSQNQYD AVRVSLFEKS LTPRPALMLS  60
FEDETTGKNW EFRYSYWNSS QSYVLTKGWS RYVKHKRLDA GDVIFFKRHR YDLHRLFIGW  120
RRRGGEANSS STLTTSTSTS SSTALLNNNN NNTTAFWNGV MPYRQTHVST AYSNHLIHPE  180
YSHYGGAVEA QSTPTGTMSS RTVRLFGVNL ECEQLNDGDV TVSAVEPPYS DADGYQGQHS  240
NYYYSTPHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-245612344113B3 domain-containing transcription factor NGA1
5os9_B4e-245612344113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA52G00027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884852.12e-68B3 domain-containing protein At3g11580
SwissprotQ8RYD32e-66Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLD7LAP46e-67D7LAP4_ARALL; Uncharacterized protein
STRINGCagra.1655s0012.1.p6e-68(Capsella grandiflora)
STRINGBostr.19424s1090.1.p5e-68(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.19e-63B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]