PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00283
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 325aa    MW: 37194.6 Da    PI: 4.8932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00283genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.62e-12161204654
                HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A++Y+k+L
  AA4G00283 161 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 204
                589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.643155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-16158224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-10161204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-5162208No hitNo description
Gene3DG3DSA:4.10.280.104.1E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELTHQINVF EDLLLPTKQE SSNTNNNTID QNQIFDHQFF NNNIDHNLFS FNNTTNLPLL  60
DHHQELNNSF LDLISQPPAP LLHNQQTPLL FDYPLLEALQ DIIDHSNSSS SSHFNTTFQT  120
LNKDPLGDES KSFEEEDLSV NYNNNNKKKC KKLEGQPSKN LMAERRRRKR LNDRLSMLRS  180
IVPKISKMDR TSILGDAIDY MKELLNKINK LQDEENQLGN INTSLLNDLN STQHLVRNSP  240
KFEVDRRTDD MRVDICCSPK PGLLLSTVNT LESLGLEIQQ CVISCFSDFS LQASCSEVDE  300
QRDFITSEDI KQALFRNAGY GGSCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12156220569Transcription factor MYC2
5gnj_B1e-12156220569Transcription factor MYC2
5gnj_E1e-12156220569Transcription factor MYC2
5gnj_F1e-12156220569Transcription factor MYC2
5gnj_G1e-12156220569Transcription factor MYC2
5gnj_I1e-12156220569Transcription factor MYC2
5gnj_M1e-12156220569Transcription factor MYC2
5gnj_N1e-12156220569Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146168KKKCKKLEGQPSKNLMAERRRRK
2163170ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00283
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150653.11e-124PREDICTED: transcription factor bHLH93
RefseqXP_013643226.11e-124transcription factor bHLH93
SwissprotQ9LSL11e-122BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3P5YIV81e-123A0A3P5YIV8_BRACM; Uncharacterized protein
TrEMBLM4E6K01e-123M4E6K0_BRARP; Uncharacterized protein
STRINGBra024404.1-P1e-123(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-107beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]