PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA4G00280

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Dof

Protein Properties

Length: 300aa MW: 32878.4 Da PI: 8.8367

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA4G00280	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.5	7.2e-39	41	99	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks AA4G00280 41 EQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 99 7899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-27	39	94	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-33	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSSPKPVLKP DNRISGTSQT KKPPPPPSPS SVTASKPSQI EQTLKCPRCN SPNTKFCYYN 60 NYSLSQPRHF CKSCRRYWTR GGALRNVPIG GGCRKTKKSI KSINNNTTTA TTTLFSDDSS 120 KFFAGLVTSS SQSPDFASLS LTNPNFNQST NFDIGSGLSL MNFGDYQSPA FSGAGGGVIT 180 GDGSLASSIE TLSCLNQDLH WRLQQQRMSM LFGNSKEENV VVERPQPILY RNLEIMNSSA 240 AETKKLGEEE NNNQTEWYFG NINDNQGVIS NNNNNNTGGS SEWSNGIQAW TDLNHYNALP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA4G00280

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189266	9e-31	AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871887.1	1e-126	dof zinc finger protein DOF5.7
Swissprot	Q9LSL6	1e-125	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	D7MTZ9	1e-124	D7MTZ9_ARALL; Dof-type zinc finger domain-containing protein
STRING	fgenesh2_kg.8__2607__AT5G65590.1	1e-125	(Arabidopsis lyrata)
STRING	Bostr.0568s0229.1.p	1e-125	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-94	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]