PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA4G00243
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 368aa    MW: 41409.6 Da    PI: 4.7987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA4G00243genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1979128255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++g
  AA4G00243  79 QYRGIRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAYKIKG 128
                7*******9.**********965...5***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.58E-3278136No hitNo description
SMARTSM003803.7E-3579142IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-2179136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-3279136IPR001471AP2/ERF domain
PfamPF008471.1E-1279128IPR001471AP2/ERF domain
PROSITE profilePS5103222.93279136IPR001471AP2/ERF domain
PRINTSPR003676.6E-118091IPR001471AP2/ERF domain
PRINTSPR003676.6E-11102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNGCLEEFMN ALEPFMNIPN RTLPVSNQTG PIGLNQLTST QIHQIQTELN LKSRRRNQQI  60
LTAKPTPMKK TGLIKPVKQY RGIRQRHWGK WVAEIRLPKN RTRLWLGTFE TAEEAALAYD  120
QAAYKIKGDQ ARLNFPGIST LGVYNQLSPL INSKLEALCN KKTEEGSSRF CCKNPKSKKN  180
SIFKGDLRNE DQFGNGFSLS SSPESDITLL DFKTENNSVF NGLSGFQCTD HKLGKDSVSN  240
DDLRNEDRFG AGFSLGSSPE SEITLMDSKL EENWGFEGLI GFSCTDTIAE KDSIFKGLSE  300
IHFTETNLDK DSILSEEQFG NGFCSPESES EITMFDFSME EESLLMGLEK YPSLEIDWEA  360
IEKLSESI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2378136160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA4G00243
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394075.29e-85ethylene-responsive transcription factor ERF057
SwissprotQ9FJQ25e-77ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLV4MJ072e-83V4MJ07_EUTSA; Uncharacterized protein
STRINGXP_006394075.13e-84(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.16e-69ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]