![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA4G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 311aa MW: 35911.9 Da PI: 9.3069 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 145 | 168 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF+ s L +H + H AA4G00060 145 WKCGYCKKSFNAESFLDQHFVNrH 168 58*****************76555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.787 | 145 | 168 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 147 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MGRLRDSLTV ILLLFHLLLH QSLSQDFVES DSTRLLSIRA LDELIAPKIS SKLLIIMISL 60 LMEFRLVKEE HGNAPEVHCS RERSRAAWRI IEDILMAVSF GYVQYLTPFV EHESYQIPKN 120 CRLHPDNDLY RDQEMHKIHV DVFEWKCGYC KKSFNAESFL DQHFVNRHYN LLNTTSTKCL 180 ADLCGALHCD FVLNSKKPKS KCNPAAVVKN RHLCENVANT CFPVSQGPSA SRLHEHFLRQ 240 FCDAHTCTGR NKPFPKGVKK RSGIFYLAIS ILTMMLLPLF YLLVFLHQRE KRTGTQELRR 300 IVKIGNKSKP S |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA4G00060 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871758.1 | 1e-150 | uncharacterized protein LOC9302618 | ||||
Refseq | XP_020871759.1 | 1e-150 | uncharacterized protein LOC9302618 | ||||
TrEMBL | D7MNZ8 | 1e-149 | D7MNZ8_ARALL; Zinc finger family protein | ||||
STRING | fgenesh2_kg.8__2327__AT5G63280.1 | 1e-150 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4371 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-138 | C2H2-like zinc finger protein |