PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA47G00002

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

Dof

Protein Properties

Length: 269aa MW: 30721.6 Da PI: 9.9406

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA47G00002	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.1	1.6e-37	34	93	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s ntkfCyynny+++qPryfC++C+ryWt+GG++r vP+G+grrknk++ AA47G00002 34 PDKILSCPRCQSINTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRSVPIGSGRRKNKTW 93 7899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-27	32	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	36	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.82	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDPSSPSPPM VNIITRFKDP PPDLKEQPKA TKKPDKILSC PRCQSINTKF CYYNNYNVNQ 60 PRYFCRNCQR YWTAGGSMRS VPIGSGRRKN KTWLPTSNHY LNQQQQHNNN NTNTNTILGF 120 NSEKTLNYQG FLAPQVMLPN SSTWPYPAGS NASFYPMHVY LGCTSLETTK PCLGKRSRDE 180 IEGGCKDNNN TETITRFVSE TLRPSEGVLS KLVKNNNEKK QEFNLFNGFE TTKGIISNRR 240 NLVTETSRNL QENPAAMSRS MNFRESIQH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA47G00002

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013693924.1	1e-90	cyclic dof factor 5-like
Refseq	XP_013694797.2	9e-91	cyclic dof factor 5-like, partial
Swissprot	Q9SEZ3	1e-86	CDF5_ARATH; Cyclic dof factor 5
TrEMBL	A0A078JM29	2e-89	A0A078JM29_BRANA; BnaC06g43390D protein
STRING	A0A087HGX7	3e-89	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13090	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	3e-84	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689] Martín G, et al. Circadian Waves of Transcriptional Repression Shape PIF-Regulated Photoperiod-Responsive Growth in Arabidopsis. Curr. Biol., 2018. 28(2): p. 311-318.e5 [PMID:29337078]