![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA46G00155 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 9051.32 Da PI: 6.7912 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.7 | 5.4e-17 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA+ELS+LCdaeva+iifs+t+kly+++s AA46G00155 1 MKKAKELSILCDAEVALIIFSNTNKLYDFAS 31 8****************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 5.6E-13 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.7E-5 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-18 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.287 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 78 aa Download sequence Send to blast |
MKKAKELSIL CDAEVALIIF SNTNKLYDFA SSSMKSTIEK FNNTKIEQQQ LLDPAAEAKF 60 WQREVTNLRH ELHTLHEN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA46G00155 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603502.1 | 2e-39 | PREDICTED: agamous-like MADS-box protein AGL17 | ||||
Swissprot | Q9SZJ6 | 3e-37 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A1J3DYU8 | 4e-39 | A0A1J3DYU8_NOCCA; Agamous-like MADS-box protein AGL17 | ||||
TrEMBL | A0A1J3IXG4 | 3e-39 | A0A1J3IXG4_NOCCA; Agamous-like MADS-box protein AGL17 (Fragment) | ||||
STRING | Bra039921.1-P | 2e-38 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-39 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|