PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA45G00032
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 276aa    MW: 31244 Da    PI: 8.7021
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA45G00032genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18195228134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+Cgt +Tp+WR+gp g+ktLCnaCG+++++ +
  AA45G00032 195 CSHCGTNNTPQWRSGPLGPKTLCNACGVRFKSGR 228
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-15189239IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-15192252No hitNo description
Gene3DG3DSA:3.30.50.103.7E-14193226IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.912193225IPR000679Zinc finger, GATA-type
CDDcd002022.78E-15194244No hitNo description
PROSITE patternPS003440195220IPR000679Zinc finger, GATA-type
PfamPF003202.5E-16195229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MELWREGRAL KASLRGEGTS LKVAGSHHQL QVQVQVVSDE KLTRASSTED FSVECFLDFS  60
QDRRLLLHEE SQENKLLSLS SSSSQEQEQD FNFASQACVF DQFPSFPDED VEELEWVSRV  120
VDDSSSSQEL SLLFTQNKPQ QLNKPHKPKP QTLISSPIPV KPRTKRPRNS LTVPKHWPLF  180
SSQEKPATTA FQRRCSHCGT NNTPQWRSGP LGPKTLCNAC GVRFKSGRLC PEYRPADSPS  240
FSNQIHSNVH RKVLELRKSK ELGESREQNK SNLAAK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA45G00032
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005886.11e-107GATA transcription factor 3
SwissprotQ8L4M61e-101GATA3_ARATH; GATA transcription factor 3
TrEMBLE4MW741e-105E4MW74_EUTHA; GATA transcription factor
TrEMBLV4LSS91e-105V4LSS9_EUTSA; GATA transcription factor
STRINGXP_006412197.11e-106(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-88GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]