PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA44G00703 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | HRT-like | ||||||||
Protein Properties | Length: 468aa MW: 53147 Da PI: 9.795 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 61.2 | 1.5e-19 | 271 | 301 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGviledGs C+++PvkgRKRC eHKG+Ri AA44G00703 271 VCGVILEDGSSCNETPVKGRKRCLEHKGQRI 301 7*****************************7 PP | |||||||
2 | HRT-like | 50.9 | 2.6e-16 | 323 | 353 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil + +C+++Pv gRKRCe HKGmRi AA44G00703 323 ICGVILPNMKPCNNKPVSGRKRCEDHKGMRI 353 8*****************************7 PP | |||||||
3 | HRT-like | 46.9 | 4.5e-15 | 438 | 467 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+l + vC+++PvkgRKRCeeHKGmRi AA44G00703 438 TCGVKLYN-RVCEKTPVKGRKRCEEHKGMRI 467 7******9.8********************7 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 468 aa Download sequence Send to blast |
MGYGDGVPFV VVPTVFKRED YKRTKHDAVF SKWQILIGSK DWEDFKEGKD GVGRYRVQNL 60 PTKSFPGLYE LGVAVINQDQ SRKLEADDVL ASYLGQAENV RSRLQSYGRS GAHLRNVNLI 120 HYNETIESPE KKAVTLGLFE DIFSKGGSIL YRWAPMRSKR EAEATEGMLL CTFDYAWNKG 180 SNGERRQLDL LQKLGNGEFM SQRKPGISRV LFPFLKNQVG IKIKGEKHVL KEERKLSCNV 240 DEVKSNFITS ILKFTKSKPQ QVSDKLDSGS VCGVILEDGS SCNETPVKGR KRCLEHKGQR 300 ICRVSPQKQR SRKLEILTDS DVICGVILPN MKPCNNKPVS GRKRCEDHKG MRINAFLFLL 360 NSQDLNKTIK DEKSETVTTH SEVNEEPLIR FCEAITKSGL PCTRNSPKES KRCWQHREKT 420 SDEQSLEVLS PVAVKEVTCG VKLYNRVCEK TPVKGRKRCE EHKGMRII |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA44G00703 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_200489.2 | 0.0 | effector of transcription2 | ||||
Refseq | XP_002866167.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
Swissprot | F4K933 | 0.0 | ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A178URY3 | 0.0 | A0A178URY3_ARATH; ET2 | ||||
TrEMBL | D7MM69 | 0.0 | D7MM69_ARALL; Uncharacterized protein | ||||
STRING | AT5G56780.1 | 0.0 | (Arabidopsis thaliana) | ||||
STRING | scaffold_802235.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56780.1 | 0.0 | effector of transcription2 |