PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00672
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 250aa    MW: 28333.9 Da    PI: 4.5175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00672genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-145699755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  Er+RR+++N++++ Lr+++P+      +K++Ka+i + A++YI+ Lq
  AA44G00672 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAIQYIQGLQ 99
                57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1714998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.47E-135299No hitNo description
SuperFamilySSF474593.14E-1752115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-1755115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENIDQEFNN YWETNTFLHN EDFEYDSWPL EEAVSGSYDS SSPDGAASSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AIQYIQGLQY EEGKLEAEIR ELESRPKSSL  120
SFGKDFDRDL LVPVTSKKIK QLDCGSSISR NSLIEVLELK VTFMGERTMV VSVTCNKRAD  180
TMVKLCEVFE ALNLKIITSN LTSFSGMIFH TVFIEQADEE EQEVLRVKIE TGIGAYNETQ  240
SPSLSIDSLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1354108963Transcription factor MYC2
5gnj_B2e-1354108963Transcription factor MYC2
5gnj_E2e-1354108963Transcription factor MYC2
5gnj_F2e-1354108963Transcription factor MYC2
5gnj_G2e-1354108963Transcription factor MYC2
5gnj_I2e-1354108963Transcription factor MYC2
5gnj_M2e-1354108963Transcription factor MYC2
5gnj_N2e-1354108963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00672
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864502.11e-161transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-159BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A087GBL81e-164A0A087GBL8_ARAAL; Uncharacterized protein
STRINGA0A087GBL81e-165(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-147bHLH family protein