PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00581
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 612aa    MW: 68336.2 Da    PI: 5.5874
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00581genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.72.7e-28193246155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W  eLH++Fv av+qL G +kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  AA44G00581 193 KPRVVWVVELHQKFVAAVQQL-GLDKAVPKKILDLMNVEGLTRENVASHLQKYRL 246
                 79*******************.********************************8 PP
2Response_reg32.25.5e-122078158
                  EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEH CS
  Response_reg  1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdG 58
                  vl vdD+p+ ++ l+++l + +y +v+ + d+++ale+l++k   +Dl++ D+emp++d 
    AA44G00581 20 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMDSKKALEMLRDKSnmFDLVISDVEMPDVDV 78
                  799********************.***************999889************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-141077No hitNo description
SuperFamilySSF521721.27E-2417119IPR011006CheY-like superfamily
SMARTSM004489.6E-1818113IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.9319117IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.1E-82077IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.34E-1442116No hitNo description
Gene3DG3DSA:3.40.50.23002.8E-1078143No hitNo description
PROSITE profilePS5129410.81190249IPR017930Myb domain
SuperFamilySSF466891.11E-18191250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-29191251IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24193246IPR006447Myb domain, plants
PfamPF002495.8E-7195245IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MELVNAEEAR KEQFPVGMRV LAVDDNPTCL RKLEELLLRC KYHVTKTMDS KKALEMLRDK  60
SNMFDLVISD VEMPDVDVLS AHSDYDHVMK GIRHGACDYL VKPVGLKELR NIWQHVVRKN  120
SNSHAKAIGS SRSLLPQSDS HPSSSVSKKR KGFSRDKIDE SGDGDGDDDD SDGEEEDGEE  180
SEHDDDDSCS RKKPRVVWVV ELHQKFVAAV QQLGLDKAVP KKILDLMNVE GLTRENVASH  240
LQKYRLYLKK MDENQHNMAT DAYGRRDSSY LQMAQLDGLR DFPSLTATRQ LPSSTLLNRS  300
HLTKLNPSLC SPINLQGINS SSFIQQGHYD NTSSNSSNLF GTYQHNLLPR LQNTNPFQRT  360
SSPLETIQFP RNKCPPYMGD FKTTPGSNFL DSQMSFGTSS NSSNSLLLQS NFRQPLHRGS  420
DGNQSCPPSS SSSPNINGHM LSRFPSHNRS SSNNWQWNLK PTRFPSSSLP LNPVFPQDLV  480
TYGGNAGDCT SLVSAENPGG ETLQCDTQLL GDFIQNMNTL EEHKGTVLNG SFGNVDYPLP  540
LPIDNSITTL NTQQVYMEPE MKPEKPENAA LIDNQQDAFD EIMNEMMKQD DNNGMGSIAA  600
RFGFDSFPPP LP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23190251263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00581
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002866248.10.0two-component response regulator ARR18 isoform X2
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLD7MPK50.0D7MPK5_ARALL; Two-component response regulator
STRINGAl_scaffold_0008_22760.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18