PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00571
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 413aa    MW: 47452.9 Da    PI: 7.2956
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00571genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.001281103323
                 ET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                 C+   Cgk+F +   L++H   H
  AA44G00571  81 CSydGCGKTFFDAGALRKHSHIH 103
                 78889**************7766 PP
2zf-C2H216.32.8e-05108132123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 y+C+   Cgk F ++s LkrH   H
  AA44G00571 108 YVCHyeGCGKKFLDSSKLKRHFLIH 132
                 9********************8877 PP
3zf-C2H213.70.00018195220123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 + Cp   Cgk++ + + Lk+H    H
  AA44G00571 195 HICPfaGCGKRYAHEYKLKNHVAAyH 220
                 68*******************87666 PP
4zf-C2H212.80.00035258283123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y Cp   C k + + + Lk H+++ H
  AA44G00571 258 YACPyeGCEKAYIHEYKLKLHLKReH 283
                 89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.1E-1374105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003379103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74179108IPR007087Zinc finger, C2H2
SuperFamilySSF576672.89E-680104No hitNo description
PROSITE patternPS00028081103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.02E-10103145No hitNo description
Gene3DG3DSA:3.30.160.602.6E-14106128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921108137IPR007087Zinc finger, C2H2
SMARTSM003550.0024108132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-9129147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.605.5E-4174191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.31E-8175221No hitNo description
Gene3DG3DSA:3.30.160.602.4E-7192216IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0093195220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-5252281No hitNo description
Gene3DG3DSA:3.30.160.607.3E-9254280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.328258288IPR007087Zinc finger, C2H2
SMARTSM003550.012258283IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MESHHYPYHN PFERRPILKS KAPAVKWIKE WVPQDIVATG GKCYLQKWVT EDTLKRLKEK  60
EKEPDAPEPE PEPTTEVLFL CSYDGCGKTF FDAGALRKHS HIHGERQYVC HYEGCGKKFL  120
DSSKLKRHFL IHTGERDFIC PHEGCGKVIY SITLTSQYCR NMQLGILLGK SNFKAFSLDF  180
NLRSHMKTHS QENYHICPFA GCGKRYAHEY KLKNHVAAYH EKNGAGETPK YTPPVEKVAR  240
TVKTPAATYA SASSDRPYAC PYEGCEKAYI HEYKLKLHLK REHPGHLQEE NAEIPTPNKN  300
NNNNDGNDLD EASDQDAYRK RSNGKNQNQT QKQQSRAKPN MRLPPVKARK KGSTSSPAKG  360
RITKKPWQAK VAFEGEGEED SEETEEDREN VEDGWRFGEN NEEEDDEETE YED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-29812198117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00571
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452281.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_018452282.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L30.0YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A087GQL70.0A0A087GQL7_ARAAL; Uncharacterized protein
STRINGBostr.3877s0062.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58592846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-178C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]