PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00003
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARR-B
Protein Properties Length: 485aa    MW: 54547.1 Da    PI: 6.517
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00003genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.27.5e-23148200155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k++l+Wt++LH+ F+ a+++LG  +kA+Pk+ile+m+v  Lt+e+v+SHLQkYR+
  AA44G00003 148 KAKLVWTENLHHLFMMAIQHLG--HKAVPKKILEFMNVSYLTRENVASHLQKYRI 200
                 689******************4..78****************************6 PP
2Response_reg59.81.5e-2038823107
                   CEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHH CS
  Response_reg  23 yeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeel 107
                   + +v+ a++++eal +lk ++  +Dl+++D  mpg+dGl+l ++i++e  ++p+iv+++  +++   e l++Ga  f+ Kp+  +++
    AA44G00003   3 M-RVTCARSATEALSILKVQRskMDLVITDYHMPGIDGLQLKRQITREFGNIPVIVMSSDINKDIESESLSRGALYFIPKPIRAKDV 88 
                   5.8999***********888888**********************99999*******************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011028.51196IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.42E-20397IPR011006CheY-like superfamily
CDDcd001568.65E-17388No hitNo description
Gene3DG3DSA:3.40.50.23003.2E-213116No hitNo description
PfamPF000723.3E-16389IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:1.10.10.608.1E-23145204IPR009057Homeodomain-like
SuperFamilySSF466891.97E-15146204IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24148200IPR006447Myb domain, plants
PfamPF002498.6E-6151199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MEMRVTCARS ATEALSILKV QRSKMDLVIT DYHMPGIDGL QLKRQITREF GNIPVIVMSS  60
DINKDIESES LSRGALYFIP KPIRAKDVPK IWKFAMSFKK DKINKESGSG NNTDADADAN  120
ANANAASNKF KSRKRKTSDS SESQASKKAK LVWTENLHHL FMMAIQHLGH KAVPKKILEF  180
MNVSYLTREN VASHLQKYRI FLRKIAEQGL RSRALMLSGS TRSKDSIFAN GNINSEPYYS  240
KPSTSTSPQL YSSATSTTAP PAYYNISGVE QPECSNPNNS FFLQPDAHDF LGFGQYEAAR  300
AYAPINFNDN IDMLNNYASL YPNHYQAAGS PPLFSSQTPF FFDNENPESH ARNPQYLPNL  360
TTHPSFDPQL QNFNVSSDFA TFKPNHDKEQ EKTASINVEI PVLVEHNKMF PFEDDACSLD  420
NINKGRTNRE TVSALVAQDM YFPVINQVKC DQNEEPYGTD LIDWSAFQDL IDSGVMDSLL  480
SDDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-18145206264ARR10-B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-80response regulator 21