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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA43G00098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23396.6 Da PI: 10.556 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 183 | 205 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdC++ F ++++L+ H+ + H AA43G00098 183 SCPDCSEIFINSESLQLHQAVrH 205 8******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 182 | 205 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGKAKEQKRS SKIVMIEKKQ ESKSRSWPVA MRSLFSFKQH YIPKQEKSTS EETLIKKTKK 60 IRCSGSLCSN TKVMHKPEIS QSPQTLKKTK QNSIDNNNKN KNNNTVSSSS SSSSSNSSST 120 RSIKAKEANS SSSSSLSLTV DSKESSFRGM PFRRFHGCYE CRMVIDPVLG ITRDSSLRAN 180 ICSCPDCSEI FINSESLQLH QAVRHAVYI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA43G00098 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010544461.1 | 1e-48 | PREDICTED: uncharacterized protein LOC104817077 | ||||
TrEMBL | A0A2I4H5D6 | 1e-43 | A0A2I4H5D6_JUGRE; uncharacterized protein LOC109013663 | ||||
STRING | XP_010544461.1 | 5e-48 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 8e-15 | C2H2-like zinc finger protein |