PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00627
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C2H2
Protein Properties Length: 267aa    MW: 30511.4 Da    PI: 9.2045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00627genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05106128223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+++++++ +L  Hi+  H
  AA40G00627 106 SCSVCSRVYPTSRLLSIHISEtH 128
                 6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355278103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080103IPR007087Zinc finger, C2H2
SMARTSM003551.7105128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280107128IPR007087Zinc finger, C2H2
SMARTSM003554.9143168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280145168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAMAVDSRSE LGFPYWTPIQ RRFSPDSPFF ASGNVERELL AKQVLLQGSE SFESVALELT  60
EDEKNQMHTF VDTETRRISC PIVGCLERLK SLDNFEDHYN ARHTASCSVC SRVYPTSRLL  120
SIHISETHDS FFEAKVARGY DMYECLVEKC GLKFKNYKSR HRHLVDKHKF PTTFEFFKKT  180
RPSKKRREKH QSQRLPTLKS GEDKEASSSA MEEDKPTIDG LISALSTLTT SDTTPSNISF  240
GRRHGRGLTF VPRSVRKESS SKPEAKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188KKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575156.11e-146zinc finger protein 511-like isoform X1
TrEMBLA0A178UDE41e-143A0A178UDE4_ARATH; Uncharacterized protein
TrEMBLQ0WRF41e-143Q0WRF4_ARATH; Nucleic acid binding / zinc ion binding protein
STRINGAT5G14140.11e-144(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99712632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-123zinc ion binding;nucleic acid binding;zinc ion binding