PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA40G00417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | HSF | ||||||||
Protein Properties | Length: 469aa MW: 52664.3 Da PI: 4.6217 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.9 | 1.1e-35 | 30 | 122 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++ ++++sws+ +nsfvv++ ef+k +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i AA40G00417 30 FLSKTYDMVDDPSSNDVVSWSSGNNSFVVWNVPEFSKVLLPRCFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKNIS 117 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + AA40G00417 118 RRKPS 122 **975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.9E-35 | 25 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.9E-60 | 26 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.6E-38 | 26 | 119 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.8E-18 | 30 | 53 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 30 | 119 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-18 | 68 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 69 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.8E-18 | 81 | 93 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MESVRESAPS ANSNSKASSI SSAVNSVPPF LSKTYDMVDD PSSNDVVSWS SGNNSFVVWN 60 VPEFSKVLLP RCFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKNISRRK 120 PSHVQNQQQN QVQSSSVGAC VEVGKFGIEE EVERLKRDKN VLMQELVRLR QQQQATENQL 180 QNVGQKVQVM EQRQQQMMSF LAKAVQRPGF LNQLVQQNND GNRQISVSNK KRRLPGDSQN 240 NCESQEANDF NRQIVKYQPS MSEAAKAVLR EILQTSNSPK YESVLNNPDS FLLGDIPNPN 300 SSSEVYGATQ AEVSPNSAHT SMNDIAEARL SHHPQAGLVQ PNLGPVQGEQ AAASSDLVDC 360 SVDNGECFDP ITAVFDRSMD LQCDAISPEE ETELFDGVPK LPGILDSFWE QFLIDESLEI 420 GEADELLSRS LENDLVMEQE ESNQWTTTNQ QMNHLTEQME LLSSETKRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-24 | 21 | 119 | 20 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-24 | 21 | 119 | 20 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-24 | 21 | 119 | 20 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA40G00417 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400223.1 | 0.0 | heat stress transcription factor A-1b | ||||
Swissprot | O81821 | 0.0 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | V4N7P1 | 0.0 | V4N7P1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400223.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 0.0 | heat shock factor 3 |
Publications ? help Back to Top | |||
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