![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA40G00157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27099.4 Da PI: 8.1934 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.6 | 2.1e-20 | 3 | 43 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+n+++r++tf kR++g+lKKA+EL +LCd++ +v+++s+ AA40G00157 3 FIQNDTQRKTTFKKRKKGLLKKAQELATLCDVKTCVVVYSP 43 89**************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-17 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.708 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.02E-21 | 2 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-19 | 3 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-5 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-5 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MNFIQNDTQR KTTFKKRKKG LLKKAQELAT LCDVKTCVVV YSPYESTPDV WPSSDAAREV 60 VTDWLAFPGT ERTKKMANQE SFTRHRLSKA NDSFKKLQKE NKEMEMKNII FKSFEGGSPQ 120 ISHLGFDGLQ DLGNVLDQYL KDINRRLEVL SGDSNDPSAS ASASVSASAS ASASASAAAS 180 ALVSASVSAS ASASVSASVD LENTTTTSGV ITVAEMNSTS VEFYGKIRSQ IQNKLNMNRM 240 NDIDLDLNM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 8 | 17 | QRKTTFKKRK |
2 | 14 | 18 | KKRKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA40G00157 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26630.1 | 4e-50 | M-type_MADS family protein |