PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA40G00044
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 587aa    MW: 68513.8 Da    PI: 6.7197
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA40G00044genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.13.1e-1592172286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                 W+ +evlaL+++r+ +e++l +       We+ s+k+ e gf+rsp++Ckek e+ ++ry   ++  +++ ++++  ++++f+++e
  AA40G00044  92 WCSDEVLALLRFRSTVENWLPEF-----TWEHTSRKLTEIGFKRSPQECKEKYEEEERRYFSSNNDHINNyNNNKGGNYRMFSEVE 172
                 *******************9987.....9*****************************9999998888876788889999999887 PP
2trihelix96.62.3e-30425523186
    trihelix   1 rWtkqevlaLiearr.............emeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                 rW+++evl+L+++rr             +        +         ++ plWe++skkm e g++rs+k+Ckekwen+nk+++k+k+ +kkr + +s+
  AA40G00044 425 RWPRDEVLTLVNIRRsistmnmmnddddQ--------NqnhhqdgisKAVPLWERISKKMLENGYKRSAKRCKEKWENINKYFRKTKDVNKKR-PLDSR 514
                 8**************88777666543221........023334445499*******************************************8.9**** PP

    trihelix  78 tcpyfdqle 86 
                 tcpyf+ql+
  AA40G00044 515 TCPYFHQLT 523
                 *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.88984143IPR017877Myb-like domain
PfamPF138371.7E-991172No hitNo description
PfamPF138375.1E-19424524No hitNo description
CDDcd122031.48E-22424503No hitNo description
PROSITE profilePS500906.632425496IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MFDGGVPEQI HRFMTSPPAP APPPPHPPVP ATERSLPLSF SPFNTNHETQ HILNLESRKI  60
IHFHHHHHHH DIKDGEWMSH DDHHHHHHDG PWCSDEVLAL LRFRSTVENW LPEFTWEHTS  120
RKLTEIGFKR SPQECKEKYE EEERRYFSSN NDHINNYNNN KGGNYRMFSE VEEFYHHDHD  180
DDDHASSEVG HNQNKSHNSL EEEPKRQENV NENGQNLLEE DKREEESKIE KSMKTIDVVD  240
DDDDNKSSSS SCLMKEKKRK RKKKEKENFN VLKGFCESLV RNMMIQQEEM HKKLLEDMLK  300
RDKEKIAKDE ALKNQEMERI KKEIEVRAQE QAIANDRSTN IIKFISNFTH HDHDHHEDQY  360
KVQSPSASQG SSYLAQSRKT QTLIPQKSPL LSLQSNKPIS IQTLKTKTQT PKPTKSDEQS  420
DLGKRWPRDE VLTLVNIRRS ISTMNMMNDD DDQNQNHHQD GISKAVPLWE RISKKMLENG  480
YKRSAKRCKE KWENINKYFR KTKDVNKKRP LDSRTCPYFH QLTALYSQGS TATSAGELPL  540
PDPETRPGNN RVGSEDPDGP AAMNHVDEDG TGQRSNVDQF SSFDLEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256261KKRKRK
2256263KKRKRKKK
3257263KRKRKKK
4258262RKRKK
5258264RKRKKKE
6260265RKKKEK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA40G00044
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084000.10.0PREDICTED: trihelix transcription factor GTL2-like isoform X1
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A087G9L10.0A0A087G9L1_ARAAL; Uncharacterized protein
STRINGA0A087G9L10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-171Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]