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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA3G00274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 242aa MW: 27884.7 Da PI: 8.1973 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.1 | 1.7e-49 | 16 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtd+el+v+yL++kv+g +l+ +i+e+di+k++Pw+Lp ++e yfFs+r+ ky++g+r+nrat sgyWkatg dk+++ ++++ AA3G00274 16 LPPGFRFHPTDQELLVQYLHRKVTGLPLPP-FIIPETDICKADPWELPGD---CDSERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIIGLkGEKV 111 79*************************999.57***************44...47899*********************************997647788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfykg+ p+g++tdWv+heyrl AA3G00274 112 IGMKKTLVFYKGKPPNGTRTDWVLHEYRL 140 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-59 | 13 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.704 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-26 | 17 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MENQSSIIIK NRALRLPPGF RFHPTDQELL VQYLHRKVTG LPLPPFIIPE TDICKADPWE 60 LPGDCDSERY FFSTREAKYP NGNRSNRATG SGYWKATGID KQIIGLKGEK VIGMKKTLVF 120 YKGKPPNGTR TDWVLHEYRL ADSQQLEITF TDSINMNWVL CRVFLKKRSC NNKKKEEDDE 180 KNCPIFYDFL TKNERENGGF RDLNLIPISC SSSSSSVVTQ TSSNDEHDQE ISCRENKFCL 240 FL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-50 | 14 | 171 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-50 | 14 | 171 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-50 | 14 | 171 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-50 | 14 | 171 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-50 | 14 | 171 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 3e-50 | 14 | 171 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-50 | 14 | 171 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA3G00274 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469465.1 | 1e-109 | PREDICTED: NAC domain-containing protein 41-like | ||||
Swissprot | O22798 | 1e-101 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | R0HQU6 | 1e-104 | R0HQU6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010469465.1 | 1e-109 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 7e-98 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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