PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00228
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 263aa    MW: 30731.4 Da    PI: 8.1244
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00228genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.83.4e-33191182103
                   HHHHHHHHHCTGGGTTTSEES.SSS......SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng......nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                   Fl+k+y++++d+ +++++sw  en+      +sfvv+ +++fa+++Lp++Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k
     AA3G00228  19 FLTKTYQLVDDPLTDHIVSWVhENNnnhessSSFVVWRPSDFARDLLPNHFKHNNFSSFVRQLNTYGFRKIAPDR---------WEFANEYFKRGEK 106
                   9*******************9544467888889****************************************99.........************* PP

                   XXXXXXXXXXXX CS
  HSF_DNA-bind  92 ellekikrkkse 103
                   +ll+ki+r+k++
     AA3G00228 107 HLLCKIHRRKTS 118
                   *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-3511110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5215115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.94E-2916115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.3E-2919115IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MATMMRIETS ECKAVPAPFL TKTYQLVDDP LTDHIVSWVH ENNNNHESSS SFVVWRPSDF  60
ARDLLPNHFK HNNFSSFVRQ LNTYGFRKIA PDRWEFANEY FKRGEKHLLC KIHRRKTSQI  120
LQQSDEEQHY WSCDQSNFVG ENDQFNGQVA VLMEDNKRLR RSNTILMSEI VHMKKLYNDI  180
IYFVQNHVKP AVASNYPSQH FNGGFSSNSK SWRSESFVSD DENEIKKTKT KLFGVSISSS  240
DENKTKKVLE KSDLDLNLMT TFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-201511817123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00228
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175142.14e-94heat shock transcription factor B4
SwissprotQ9C6353e-95HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A178WEG44e-93A0A178WEG4_ARATH; SCZ
STRINGAT1G46264.11e-93(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-96heat shock transcription factor B4