PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA3G00017
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family HSF
Protein Properties Length: 341aa    MW: 36510.5 Da    PI: 4.5557
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA3G00017genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1032.5e-3253132290
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                   Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fk+  
     AA3G00017  53 FLTKTYQLVDDPTYDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDYFKRVA 132
                   9****************************************************************999.........********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3646131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-4549134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.95E-3150130IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.6E-2953132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-205376IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-2091103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-20104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1702.0E-4187215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MPGEQTGETP TIAGVGGGGA GCSGGNSGSS GGGGGGGGGG GGGDSQRSIP TPFLTKTYQL  60
VDDPTYDDLI SWNEDGTTFI VWRPAEFARD LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR  120
WEFSNDYFKR VAATAVTVAA VPMVAHAISP SNSGEEQVIS SNSSPAAAAM GVVGALQRTT  180
SCTTGPELIE ENERLRKENM QLSQELTKLK GLYSNIYTLM ANFTSGQVDC ASLLPEGKPL  240
DLLPERQGTS AAMAMVSRVE EGIGLKFDSD MTPRLFGVNI GAKRARRDEE LGAEEEDEMR  300
EKVGKLSNNT REGEQGSDVK LEPVEENNSE NHNGPWLELG K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A6e-22531171074Heat shock factor protein 1
5hdn_A6e-22531171074Heat shock factor protein 1
5hdn_B6e-22531171074Heat shock factor protein 1
5hdn_C6e-22531171074Heat shock factor protein 1
5hdn_D6e-22531171074Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA3G00017
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396868.11e-162heat stress transcription factor B-2b
RefseqXP_024009823.11e-162heat stress transcription factor B-2b
SwissprotQ9T0D31e-137HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4N0261e-161V4N026_EUTSA; Uncharacterized protein
STRINGXP_006396868.11e-161(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-131HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]